2025

1. Opportunities and Challenges in Combining Optical Sensing and Epidemiological Modelling

   Alexey Mikaberidze, C. D. Cruz, Ayalsew Zerihun, Abel Barreto, Pieter Beck, Rocı́o Calderón, Carlos Camino, Rebecca E. Campbell, Stephanie K. L. Delalieux, Frederic Fabre, Elin Falla, Stuart Fraser, Kaitlin M. Gold, Carlos Gongora-Canul, Frédéric Hamelin, Dalphy O. C. Harteveld, Cheng-Fang Hong, Melen Leclerc, Da-Young Lee, Murillo Lobo Jr., Anne-Katrin Mahlein, Emily McLay, Paul Melloy, Stephen Parnell, Uwe Rascher, Jack Rich, Irene Salotti, Samuel Soubeyrand, Susan Sprague, Antony Surano, Sandhya D. Takooree, Thomas H. Taylor, Suzanne Touzeau, Pablo J. Zarco-Tejada, and Nik J. Cunniffe

   Phytopathology (2025)
2. Taking fear back into the Marginal Value Theorem: the rMVT and optimal boldness

   Vincent Calcagno, Frédéric Grognard, Frédéric M Hamelin, and Ludovic Mailleret

   Evolution (2025)

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3. How coevolution in daily activity rhythms governs encounters between predator and prey

   Etienne Sirot, Thomas Benoit, and Frédéric M. Hamelin

   Animal Behaviour (2025)

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2024

1. Combining Masculinizing Resistance, Rotation, and Biocontrol to Achieve Durable Suppression of the Potato Pale Cyst Nematode: A Model

   Israël Tankam Chedjou, Josselin Montarry, Sylvain Fournet, and Frédéric M Hamelin

   Evolutionary Applications (2024)

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2. Selfish grower behavior can group-optimally eradicate plant diseases caused by coinfection

   Frank M Hilker, Lea D Kolb, and Frédéric M Hamelin

   International Game Theory Review (2024)

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3. Identifiability and Observability in Epidemiological Models

   N Cunniffe, Frédéric M Hamelin, A Iggidr, A Rapaport, and G Sallet

   BCAM Springer Briefs (2024)

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2023

1. About the identifiability and observability of the SIR epidemic model with quarantine

   Frédéric Hamelin, Abderrahman Iggidr, Alain Rapaport, Gauthier Sallet, and Max Souza

   IFAC-PapersOnLine (2023)

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2. Imaging with spatio-temporal modelling to characterize the dynamics of plant-pathogen lesions

   Melen Leclerc, Stéphane Jumel, Frédéric M Hamelin, Rémi Treilhaud, Nicolas Parisey, and Youcef Mammeri

   PLoS Computational Biology (2023)

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3. Spatial spread of infectious diseases with conditional vector preferences

   Frédéric M Hamelin, Frank M Hilker, and Yves Dumont

   Journal of Mathematical Biology (2023)

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4. The proportion of resistant hosts in mixtures should be biased towards the resistance with the lowest breaking cost

   Pauline Clin, Frédéric Grognard, Didier Andrivon, Ludovic Mailleret, and Frédéric M Hamelin

   PLOS Computational Biology (2023)

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5. Emerging themes and approaches in plant virus epidemiology

   Michael J Jeger, Frédéric M Hamelin, and Nik J Cunniffe

   Phytopathology (2023)

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6. Improving sustainable crop protection using population genetics concepts

   Méline Saubin, Clémentine Louet, Lydia Bousset, Frédéric Fabre, Pascal Frey, Isabelle Fudal, Frédéric Grognard, Frédéric Hamelin, Ludovic Mailleret, Solenn Stoeckel, and  others

   Molecular Ecology (2023)

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2022

1. How growers make decisions impacts plant disease control

   Rachel E Murray-Watson, Frédéric M Hamelin, and Nik J Cunniffe

   PLoS Computational Biology (2022)

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2. Host Diversification May Split Epidemic Spread into Two Successive Fronts Advancing at Different Speeds

   FM Hamelin, Y Mammeri, Y Aigu, SE Strelkov, and MA Lewis

   Bulletin of Mathematical Biology (2022)

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3. Host mixtures for plant disease control: Benefits from pathogen selection and immune priming

   Pauline Clin, Frédéric Grognard, Didier Andrivon, Ludovic Mailleret, and Frédéric M Hamelin

   Evolutionary Applications (2022)

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4. Metacommunity dynamics and the detection of species associations in co-occurrence analyses: Why patch disturbance matters

   Vincent Calcagno, Nik J Cunniffe, and Frédéric M Hamelin

   Functional Ecology (2022)

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2021

1. Coévolution des hôtes et de leurs parasites: la théorie

   Aurélien Tellier, and Frédéric Hamelin

   L’immunité végétale. Editions Quae. (2021)
2. De nouvelles propriétés du pic épidémique

   Nicolas Bacaër, Frédéric Hamelin, and Hisashi Inaba

   Quadrature (2021)

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3. Epidemiological and ecological consequences of virus manipulation of host and vector in plant virus transmission

   Nik J Cunniffe, Nick P Taylor, Frédéric M Hamelin, and Michael J Jeger

   PLoS Computational Biology (2021)

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4. Optimal control of plant disease epidemics with clean seed usage

   FM Hamelin, Brady Bowen, Pierre Bernhard, and VA Bokil

   Bulletin of Mathematical Biology (2021)

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5. Taking advantage of pathogen diversity and immune priming to minimize disease prevalence in host mixtures: a model

   Pauline Clin, Frédéric Grognard, Ludovic Mailleret, Florence Val, Didier Andrivon, and Frédéric M Hamelin

   Phytopathology (2021)

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2020

1. Separate seasons of infection and reproduction can lead to multi-year population cycles

   FM Hilker, TA Sun, LJS Allen, and FM Hamelin

   Journal of Theoretical Biology (2020)

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2. How optimal foragers should respond to habitat changes: on the consequences of habitat conversion

   Vincent Calcagno, Frédéric Hamelin, Ludovic Mailleret, and Frédéric Grognard

   Theoretical Ecology (2020)

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2019

1. Modelling vector transmission and epidemiology of co-infecting plant viruses

   Linda JS Allen, Vrushali A Bokil, Nik J Cunniffe, Frédéric M Hamelin, Frank M Hilker, and Michael J Jeger

   Viruses (2019)

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2. Coinfections by noninteracting pathogens are not independent and require new tests of interaction

   Frédéric M Hamelin, Linda JS Allen, Vrushali A Bokil, Louis J Gross, Frank M Hilker, Michael J Jeger, Carrie A Manore, Alison G Power, Megan A Rúa, and Nik J Cunniffe

   PLoS Biology (2019)

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3. Assessing the effects of quantitative host resistance on the life-history traits of sporulating parasites with growing lesions

   Melen Leclerc, Julie AJ Clément, Didier Andrivon, and Frédéric M Hamelin

   Proceedings of the Royal Society B (2019)

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4. The ecological and evolutionary trajectory of oak powdery mildew in Europe

   Marie-Laure Desprez-Loustau, Frédéric Hamelin, and Benoit Marçais

   Wildlife Disease Ecology: Linking Theory to Data and Application. Cambridge University Press (2019)

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2017

1. The evolution of parasitic and mutualistic plant–virus symbioses through transmission-virulence trade-offs

   Frédéric M Hamelin, Frank M Hilker, T Anthony Sun, Michael J Jeger, M Reza Hajimorad, Linda JS Allen, and Holly R Prendeville

   Virus Research (2017)

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2. Modeling virus coinfection to inform management of maize lethal necrosis in Kenya

   Frank M Hilker, Linda JS Allen, Vrushali A Bokil, Cheryl J Briggs, Zhilan Feng, Karen A Garrett, Louis J Gross, Frédéric M Hamelin, Michael J Jeger, Carrie A Manore, and  others

   Phytopathology (2017)

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3. Mate limitation in fungal plant parasites can lead to cyclic epidemics in perennial host populations

   Virginie Ravigné, Valérie Lemesle, Alicia Walter, Ludovic Mailleret, and Frédéric M Hamelin

   Bulletin of Mathematical Biology (2017)

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2016

1. Temporal niche differentiation of parasites sharing the same plant host: oak powdery mildew as a case study

   Frédéric M Hamelin, Anne Bisson, Marie-Laure Desprez-Loustau, Frédéric Fabre, and Ludovic Mailleret

   Ecosphere (2016)

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2. Mate finding, sexual spore production, and the spread of fungal plant parasites

   Frédéric M Hamelin, François Castella, Valentin Doli, Benoı̂t Marçais, Virginie Ravigné, and Mark A Lewis

   Bulletin of Mathematical Biology (2016)

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3. Adaptation to resistant hosts increases fitness on susceptible hosts in the plant parasitic nematode \textitGlobodera pallida

   Sylvain Fournet, Delphine Eoche-Bosy, Lionel Renault, Frédéric M Hamelin, and Josselin Montarry

   Ecology and Evolution (2016)

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4. The evolution of plant virus transmission pathways

   Frédéric M Hamelin, Linda JS Allen, Holly R Prendeville, M Reza Hajimorad, and Michael J Jeger

   Journal of Theoretical Biology (2016)

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5. Sharing a resource with randomly arriving foragers

   Pierre Bernhard, and Frédéric Hamelin

   Mathematical Biosciences (2016)

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2015

1. Evolution of dispersal in asexual populations: to be independent, clumped or grouped?

   Samuel Soubeyrand, Ivan Sache, Frédéric Hamelin, and Etienne K Klein

   Evolutionary Ecology (2015)

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2014

1. The functional response predicts the effect of resource distribution on the optimal movement rate of consumers

   Vincent Calcagno, Frédéric Grognard, Frédéric M Hamelin, Eric Wajnberg, and Ludovic Mailleret

   Ecology Letters (2014)

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2. Simple signaling games of sexual selection (Grafen’s revisited)

   Pierre Bernhard, and Frédéric M Hamelin

   Journal of Mathematical Biology (2014)

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3. Allee effects and the evolution of polymorphism in cyclic parthenogens

   Magda Castel, Ludovic Mailleret, Didier Andrivon, Virginie Ravigné, and Frédéric M Hamelin

   The American Naturalist (2014)

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2013

1. The hard life of \textirPhytophthora infestans: when trade-offs shape evolution in a biotrophic plant pathogen

   Didier Andrivon, Josselin Montarry, Roselyne Corbiere, Claudine Pasco, Isabelle Glais, Bruno Marquer, JAJ Clément, Magda Castel, and FM Hamelin

   Plant Pathology (2013)

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2012

1. From elaborate to compact seasonal plant epidemic models and back: is competitive exclusion in the details?

   Ludovic Mailleret, Magda Castel, Josselin Montarry, and Frédéric M Hamelin

   Theoretical Ecology (2012)

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2011

1. Seasonality and the evolutionary divergence of plant parasites

   Frédéric M Hamelin, Magda Castel, Sylvain Poggi, Didier Andrivon, and Ludovic Mailleret

   Ecology (2011)

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2010

1. Fitness costs associated with unnecessary virulence factors and life history traits: evolutionary insights from the potato late blight pathogen Phytophthora infestans

   Josselin Montarry, Frédéric M Hamelin, Isabelle Glais, Roselyne Corbière, and Didier Andrivon

   BMC Evolutionary Biology (2010)

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2. A differential game theoretical analysis of mechanistic models for territoriality

   Frédéric M Hamelin, and Mark A Lewis

   Journal of Mathematical Biology (2010)

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2009

1. Two-by-two static, evolutionary, and dynamic games

   Pierre Bernhard, and Frédéric Hamelin

   From Semantics to Computer Science: Essays in Honour of Gilles Kahn, Cambridge University Press (2009)

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2008

1. Uncoupling Isaacs equations in two-player nonzero-sum differential games. Parental conflict over care as an example

   Frédéric Hamelin, and Pierre Bernhard

   Automatica (2008)

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2007

1. Jeux dynamiques en écologie du comportement

   Frédéric Hamelin

   PhD dissertation, Univ. Côte d’Azur (2007)

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2. Foraging Under Competition: Evolutionarily Stable Patch-Leaving Strategies with Random Arrival Times. 2. Interference competition.

   Frédéric Hamelin, Pierre Bernhard, A.J. Shaiju, and Éric Wajnberg

   Advances in Dynamic Game Theory, Birkhäuser, Boston (2007)

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3. Foraging Under Competition: Evolutionarily Stable Patch-Leaving Strategies with Random Arrival Times. 1. Scramble competition.

   Frédéric Hamelin, Pierre Bernhard, Philippe Nain, and Éric Wajnberg

   Advances in Dynamic Game Theory, Birkhäuser, Boston (2007)

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4. Diet selection as a differential foraging game

   Frédéric Hamelin, Pierre Bernhard, AJ Shaiju, and Eric Wajnberg

   SIAM Journal on Control and Optimization (2007)

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5. Superparasitism as a differential game

   Frédéric Hamelin, Pierre Bernhard, and Eric Wajnberg

   Theoretical Population Biology (2007)

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2006

1. Optimal patch time allocation for time-limited foragers

   Eric Wajnberg, Pierre Bernhard, Frédéric Hamelin, and Guy Boivin

   Behavioral Ecology and Sociobiology (2006)

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